txt
########################################
# Program: needle
# Rundate: Wed 9 Oct 2024 07:51:39
# Commandline: needle
# -auto
# -stdout
# -asequence emboss_needle-I20241009-075134-0284-30927687-p1m.asequence
# -bsequence emboss_needle-I20241009-075134-0284-30927687-p1m.bsequence
# -datafile EDNAFULL
# -gapopen 10.0
# -gapextend 0.5
# -endopen 10.0
# -endextend 0.5
# -aformat3 pair
# -snucleotide1
# -snucleotide2
# Align_format: pair
# Report_file: stdout
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: EMBOSS_001
# 2: 2857093-2859654
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 3263
# Identity: 1390/3263 (42.6%)
# Similarity: 1390/3263 (42.6%)
# Gaps: 1470/3263 (45.1%)
# Score: 1922.5
#
#
#=======================================
EMBOSS_001 1 -----------AG-ACGTTTCCTTGGCTCTTCTGGCGCCAAAATGTCGTT 38
|| |..|||| |.||||.|.|.|.|..|
2857093-28596 1 ATGAGTGCAATAGAAAATTTC------------GACGCCCATACGCCCAT 38
EMBOSS_001 39 CGTG--GCAGGGGTTATTCGGCGGCTGGACGAGACAGTGGTGAA----CC 82
..|| |||| ||| || ||| |.|||| |.
2857093-28596 39 GATGCAGCAG----TAT-------CT--------CAG-GCTGAAAGCCCA 68
EMBOSS_001 83 GCATCGCGGCGGGGGAAGTTATCCAGCGG-----CCAGCTAATGCTATCA 127
|||||.|| || ||||.||.| ||.| |||
2857093-28596 69 GCATCCCG--------AG--ATCCTGCTGTTTTACCGG---ATG------ 99
EMBOSS_001 128 AAGAGATGATTGAGAACTGTTT-----AGATGCAAAATC------CACAA 166
.|.|||..||..||||||||| .||.|||||| | |.|||
2857093-28596 100 -GGTGATTTTTATGAACTGTTTTATGACGACGCAAAA-CGCGCGTCGCAA 147
EMBOSS_001 167 -------GTATT--------CAA-----GTGATT-GTTAAAGAGGGAG-G 194
.|||| ||| |||.|| | |.||||| |
2857093-28596 148 CTGCTGGATATTTCACTGACCAAACGCGGTGCTTCG-----GCGGGAGAG 192
EMBOSS_001 195 CCTGAAGTTGATTCAGATCCAAGACAATGGCACCGGGAT-------CA-- 235
|| ||||| |.|||| |.||||| ||
2857093-28596 193 CC-------------GATCC----CGATGG--CGGGGATTCCCTACCATG 223
EMBOSS_001 236 ----GGAAAGAAGATCTGG--ATATTGTATGTGAA--AGGTTCACTACTA 277
||||| |..||||.| |.|.|| ||||| ||| .|
2857093-28596 224 CGGTGGAAA-ACTATCTCGCCAAACTG---GTGAATCAGG--------GA 261
EMBOSS_001 278 GTAAACTGCAGTCCTTTGAGGATTTAGCCAGTATTTCTACCTA-----TG 322
| |||||.|| |||| |||.|..| ||
2857093-28596 262 G--------AGTCCGTT---------GCCA-----TCTGCGAACAAATTG 289
EMBOSS_001 323 GCTTTCGAGGTGAGGCTTTGGCCAGCA----------TAAGC-CA----T 357
|| |.|..||| |.|||||| |.||| || |
2857093-28596 290 GC------GATCCGGC---GACCAGCAAAGGTCCGGTTGAGCGCAAAGTT 330
EMBOSS_001 358 GTGGCTCAT-GTTACTATTACAACGAA--AACAGCTGATGGAAAG---TG 401
|| ||..|| ||||| .|.|.|.| |.|||| |||| ||| ||
2857093-28596 331 GT-GCGTATCGTTAC----GCCAGGCACCATCAGC-GATG--AAGCCCTG 372
EMBOSS_001 402 -TGCATACAGAGCAAGTTACTCAGATGGA-AAACTGAAAGCCCCTCCTAA 449
|||| .|||| ||.| ||| ||.|||...||..||
2857093-28596 373 TTGCA---GGAGC--GTCA-------GGACAACCTGCTGGCGGCT----- 405
EMBOSS_001 450 ACCATGTGCTGGCA----ATCAAGGG--------ACCCAGATCACGGTGG 487
|| |||||| |.|||.|| ||.| .|||.|||
2857093-28596 406 ---AT---CTGGCAGGACAGCAAAGGTTTCGGCTACGC----GACGCTGG 445
EMBOSS_001 488 A----------GGACCTTTT-----------------TTAC-----AAC- 504
| ||.|.|||| |.|| |||
2857093-28596 446 ATATCAGTTCCGGGCGTTTTCGCCTGAGCGAACCGGCTGACCGCGAAACG 495
EMBOSS_001 505 ATAGCCACGAGG-AGAAAAGCTTTAAAA------AATCCAAGTGAAGAA- 546
||.|| || ||||..|| || ||||| ||..|||
2857093-28596 496 ATGGC-----GGCAGAACTGC-----AACGCACTAATCC---TGCGGAAC 532
EMBOSS_001 547 -----TATG-GGAAAATTTTG--GAA--GTTGTTGGCAGGTATTCAGTAC 586
|||| .|||.|||||| ||| ||.|||
2857093-28596 533 TGCTGTATGCAGAAGATTTTGCTGAAATGTCGTT---------------- 566
EMBOSS_001 587 ACAA-TGCAGGCATTAG--------------------TTTCTCAGTTAAA 615
|| ||.||||..|.| |.|...||||..|
2857093-28596 567 --AATTGAAGGCCGTCGCGGCCTGCGCCGTCGCCCGCTGTGGGAGTTTGA 614
EMBOSS_001 616 AA---ACAAGGAGAGACAGTAGCTGA---TG----TTAGGACACTACCCA 655
|| |||..|.|.|.|||.||.||| || ||.||||
2857093-28596 615 AATCGACACCGCGCGCCAGCAGTTGAATCTGCAATTTGGGAC-------- 656
EMBOSS_001 656 ATGCCTCAACCGTGGACAATATTCGCTCCATCTTTGGAAATGCTGTTAGT 705
||.|.|.| ||| |||.| ||||| .||
2857093-28596 657 ---CCGCGATC-TGG-------TCGGT-----TTTGG----------CGT 680
EMBOSS_001 706 CGAGAA----CTGATAGAAATTGGATGTGAGGATAAAACCCTAGCC---- 747
|||||| |.|...|.|.|| |||| || |||
2857093-28596 681 CGAGAACGCGCCGCGCGGACTT---TGTG-----------CT-GCCGGTT 715
EMBOSS_001 748 ------TTCAAAAT--GAATGGTTACATATCCAATGCAAACTACTCAGTG 789
|.||..|| ||| |.|||.|||| |..||.||||.|
2857093-28596 716 GTCTGTTGCAGTATGCGAA-----AGATACCCAA--CGTACGACTCTG-- 756
EMBOSS_001 790 AAGAAGTGCATCTTCTTACTCTTCATCAACCATCGTCTGGTAGAATCAAC 839
..||||.|||.| |.|||| |||| |||.|
2857093-28596 757 -----CCGCATATTCGT----TCCATC-ACCA-----TGGAA-------- 783
EMBOSS_001 840 TTCCTTG---AGAAAAGC--CA-TAGAAACAGTGTATGCAGCCTATTTGC 883
|.|| ||.|.||| || || ||.||||.||
2857093-28596 784 ---CGTGAGCAGGACAGCATCATTA-------TGGATGCCGC-------- 815
EMBOSS_001 884 CCAAAAACACACACCCATTCCTGTACCTCAGTTTAGAAATCAGTCCCCAG 933
.||.|.| |..|.|.|.||||||| |||||
2857093-28596 816 -----------GACGCGT--------CGTAATCTGGAAATCA---CCCAG 843
EMBOSS_001 934 AATGTGGATGTTAATGTGCACCCCACAAAGCATGAAGTTCACTTC----- 978
||..|||..|.|..||.|.| ||| .|.|.|..||||
2857093-28596 844 AACCTGGCGGGTGGTGCGGA------AAA----TACGCTGGCTTCTGTGC 883
EMBOSS_001 979 ----CTGCA---------CGA-GGAGAGC---ATCCTGGAGC---GGGTG 1008
||||| ||| ||..||| ||.|||.|.| ||.||
2857093-28596 884 TCGACTGCACCGTCACGCCGATGGGCAGCCGTATGCTGAAACGCTGGCTG 933
EMBOSS_001 1009 CAGCAGCACA----------------------TCGAG----AGCAAGCTC 1032
||...|| || |.||| |||||.||.
2857093-28596 934 CATATGC-CAGTGCGCGATACCCGCGTGTTGCTTGAGCGCCAGCAAACTA 982
EMBOSS_001 1033 CTGG-GCTCCAATTCCTCCAGGATGTACTTCACC---------CAGACTT 1072
.||| || || |.|||||| |||||| |||.|..
2857093-28596 983 TTGGCGC----AT---TGCAGGAT----TTCACCGCCGGGCTACAGCCGG 1021
EMBOSS_001 1073 TGCTAC--CAG------GACTTG---------CTGGCCCCTCTGGGGAGA 1105
|.||.| ||| |||.|| |||||.|.|||||
2857093-28596 1022 TACTGCGTCAGGTCGGCGACCTGGAACGTATTCTGGCACGTCTGG----- 1066
EMBOSS_001 1106 TGGTTA--AA----TCCACAACAAG-TCTGACCTCGT----------CTT 1138
..||| || ||..|.||..| ||||.|| ||| |||
2857093-28596 1067 -CTTTACGAACTGCTCGCCCACGCGATCTGGCC-CGTATGCGCCACGCTT 1114
EMBOSS_001 1139 -----CTACTTCTGGA--------AGTAGT--GATAAGGTCTAT-GCCCA 1172
|.|||.|.||| .|.||| ||.|..|||.|| |..||
2857093-28596 1115 TCCAGCAACTGCCGGAGCTGCGTGCGCAGTTAGAAACTGTCGATAGTGCA 1164
EMBOSS_001 1173 CC--------------------AGATGGTTCGTACAGATTCCCGGGAACA 1202
|| |||||| .|| ||.||.|||
2857093-28596 1165 CCGGTACAGGCGCTACGTGAGAAGATGG-GCG---AGTTTGCCG------ 1204
EMBOSS_001 1203 GAAGCTTGATGC---AT-TTCTGCAGCCTCTGAGCAAACCCCTGTCCAGT 1248
||| ||| || |.|||.||| ||||||.| .||.|..
2857093-28596 1205 --AGC----TGCGCGATCTGCTGGAGC----GAGCAATC----ATCGACA 1240
EMBOSS_001 1249 CAGCCCC---------AGGCCA--------TTGTCACAGAGG---ATAA- 1277
||.|.|| |.||.| ||.||.||..|| ||||
2857093-28596 1241 CACCGCCGGTGCTGGTACGCGACGGTGGTGTTATCGCATCGGGCTATAAC 1290
EMBOSS_001 1278 GACAGATATTTCT-----AGTGGCAG------GGCT--AGGCAGCAA--G 1312
|| ||| .|| |||||| | |||| .||| ||.| |
2857093-28596 1291 GA-AGA----GCTGGATGAGTGGC-GCGCGCTGGCTGACGGC-GCGACCG 1333
EMBOSS_001 1313 AT------GAG-------------GAGATGCTTGAAC-TCCCAGCC---- 1338
|| ||| |.|| ||.||||| |.||.|||
2857093-28596 1334 ATTATCTGGAGCGTCTGGAAGTCCGCGA-GCGTGAACGTACCGGCCTGGA 1382
EMBOSS_001 1339 CCTGCTGAA--GTGGCT---------------GCCA-------AAAATCA 1364
|..|||||| .||||| ||.| .||||||
2857093-28596 1383 CACGCTGAAAGTTGGCTTTAATGCGGTGCACGGCTACTACATTCAAATCA 1432
EMBOSS_001 1365 GAGCTTGGAGGGGGATACAACAAAG------GGGA--CTTCA--GAAAT- 1403
|...|.|| ||||| ||.| |.||| .|.||
2857093-28596 1433 GCCGTGGG------------CAAAGCCATCTGGCACCCATCAACTACATG 1470
EMBOSS_001 1404 ----GTCAGA----GAA-------GAGAGGACCTAC----TTCCAGCAAC 1434
|.|||| ||| |||.| |||| ||||||
2857093-28596 1471 CGTCGCCAGACGCTGAAAAACGCCGAGCG---CTACATCATTCCAG---- 1513
EMBOSS_001 1435 CCCAG---AAAGAG-ACATCGGGAAGA-----TTCTGATGTGGAAATGGT 1475
|| |||||| || ||||| ||||.|
2857093-28596 1514 ---AGCTAAAAGAGTAC-----GAAGATAAAGTTCTCA------------ 1543
EMBOSS_001 1476 GGAAGATGATTCC-CGAAAGG-AAATGACTG------------CAGCTTG 1511
|| |.||||| |||..|||| ||||||
2857093-28596 1544 -----------CCTCAAAAGGCAAAGCACTGGCACTGGAAAAACAGCTT- 1581
EMBOSS_001 1512 TACCCCCCGGAGAAG-GATCATTAACCTCACTAG-TGTTTTGAGTCTC-- 1557
|| .|||| |.|..|..|||| | |||| |.|.|
2857093-28596 1582 TA--------TGAAGAGCTGTTCGACCT-----GCTGTT----GCCGCAT 1614
EMBOSS_001 1558 CAGGAAGAAATTAATGAGCAGGGACATGAGGTTCTCCGGGA----GATGT 1603
|.|||||...| ||| ||| ||| ||.|| |.||
2857093-28596 1615 CTGGAAGCGTT------GCA---ACA-GAG------CGCGAGCGCGCTG- 1647
EMBOSS_001 1604 TGCATAACCACTCCTTCG-TGGGCTGTGTGAATCCTCAGTGGGCCTTGGC 1652
||..||| ||| .|.|||| ||.|| ||| ||| ||.
2857093-28596 1648 -GCGGAAC-------TCGACGTGCTG-GTTAA-CCT-----GGC---GGA 1679
EMBOSS_001 1653 ACAGCATCAAACCAAGTTATACCTTCTCAACACCA-----CCAAGCTT-A 1696
||.| .|| |||||| ||.|||..|| ||.|.||| |
2857093-28596 1680 ACGG------GCC----TATACC--CTGAACTACACCTGCCCGACCTTCA 1717
EMBOSS_001 1697 GTGAAGAACTG----TTC----TACCAGA--------------------- 1717
.|||..|||.| ||| |||| ||
2857093-28596 1718 TTGATAAACCGGGCATTCGCATTACC-GAAGGTCGCCATCCGGTAGTTGA 1766
EMBOSS_001 1718 -----TACT--------CATTTA------------TGATTTTG------- 1735
|||| |||||| |||.|.||
2857093-28596 1767 ACAAGTACTGAATGAGCCATTTATCGCCAACCCGCTGAATCTGTCGCCGC 1816
EMBOSS_001 1736 -----CCAATTTTGGTGTTCTCAGGT------------------------ 1756
|..||.|||.|..||.|.|||
2857093-28596 1817 AGCGCCGCATGTTGATCATCACCGGTCCGAACATGGGCGGTAAAAGTACC 1866
EMBOSS_001 1757 TATCGGAGCCAGCACCGCTCTTTGACCTTGCCATGCTTGCCTTAGAT--- 1803
|||..|.||||| |||||.| ||| ||||..||.|.||| ||.||
2857093-28596 1867 TATATGCGCCAG-ACCGCAC--TGA--TTGCGCTGATGGCC-TACATCGG 1910
EMBOSS_001 1804 ---------------------AGTCCAGAGAGTGG--------------- 1817
|||| ||||.|||
2857093-28596 1911 CAGCTATGTACCGGCACAAAAAGTC--GAGATTGGACCTATCGATCGCAT 1958
EMBOSS_001 1818 CTGGAC---------AGAGGAAGATG-------GTCCCAAAGAAGGACTT 1851
||..|| .|.||.||||| |||| ||.|
2857093-28596 1959 CTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCC-------GGGC-- 1999
EMBOSS_001 1852 GCTGAA--TACATTGTTGAG-TTTCTGAAGAAGAAGGCTGAGATGCTTGC 1898
|||.|| |..||.||.||| |..||||| |..||..|.|| .||.|
2857093-28596 2000 GCTCAACCTTTATGGTGGAGATGACTGAA----ACCGCCAATAT-TTTAC 2044
EMBOSS_001 1899 AGA-------CTATTTCTCTTTGG---AAATTGATGA-----GGAAGGGA 1933
|.| |.|.|.|..|.||| .|||.||||| ||...|||
2857093-28596 2045 ATAACGCCACCGAATACAGTCTGGTGTTAATGGATGAGATCGGGCGTGGA 2094
EMBOSS_001 1934 ACCTGATTGGATTACC-CCTTCTGATTGACAACTATGTGCCCCCTTTGGA 1982
||.| || |||.| |||.| |.||| |.||...|.
2857093-28596 2095 ACGT----------CCACCTAC-GATGG-----TCTGT---CGCTGGCGT 2125
EMBOSS_001 1983 GGGACTGCCTATCTTCATTCTTCGACTAGCCACTGAGGTGAAT-TGGGAC 2031
|||..||| |.||..||| ||| |
2857093-28596 2126 GGGCGTGC--------------------------GCGGAAAATCTGG--C 2147
EMBOSS_001 2032 GAAGAA----AAGGAATGTTTTGAAAGCCTCAGTAAAGAATGCGCTATGT 2077
|||.|| ||||.| |||| ||.|||.|
2857093-28596 2148 GAATAAGATTAAGGCA----TTGA------------------CGTTATTT 2175
EMBOSS_001 2078 TCTATTCCATCCGGAAGCAGTACATATCTGAGGAGTCGACCCTCTCAGGC 2127
.||| || ||.| ||.|| |||..|||||..|.| |
2857093-28596 2176 GCTA--CC---------CACT--ATTTC----GAGCTGACCCAGTTA--C 2206
EMBOSS_001 2128 C--AGCAGAGTGAAGTGCCTGGC-----TCCATTCCAAACTCCTGGAAGT 2170
| ||.|.|..|||| ||.|.|| |.||| ||.|| |
2857093-28596 2207 CGGAGAAAATGGAAG-GCGTCGCTAACGTGCAT---------CTCGA--T 2244
EMBOSS_001 2171 GGACTGTGGAACACATTGTCTATAAAGCCTTGCGCTCACA-CATTCTGCC 2219
|.|| ||||.||| .||| ||| ||| ||||
2857093-28596 2245 GCAC--TGGAGCAC----------------GGCG---ACACCAT--TGCC 2271
EMBOSS_001 2220 TCCTAAACATTTCACAG-----AAGATGG-----------AAATAT---- 2249
| .|| |.||||| |.||||| |||..|
2857093-28596 2272 T-TTA-----TGCACAGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGG 2315
EMBOSS_001 2250 CCTGCAGCTTGCTAACCTGCCTGATCTATACAAAGTCTTTGAGAGGTGT- 2298
||||..|.|||| || ||.||..|||.||
2857093-28596 2316 CCTGGCGGTTGC---------------------AG-CTCTGGCAGGCGTG 2343
EMBOSS_001 2299 --TAAATATGGTTATTTA---TGCA---------CTGTGGGATGTG---- 2330
.|||.| |||||||.| .||| |||.|.||..||
2857093-28596 2344 CCAAAAGA-GGTTATTAAGCGCGCACGGCAAAAGCTGCGTGAGCTGGAAA 2392
EMBOSS_001 2331 ----TTCTTCTTTCTCTGTATTCCGATAC-AAAGTG--TTGTA-TCAAAG 2372
|||..|...|.|.| |||.||| .||||| |.||| .||||
2857093-28596 2393 GCATTTCGCCGAACGCCG----CCGCTACGCAAGTGGATGGTACGCAAA- 2437
EMBOSS_001 2373 TG----TGATATACAAAGTGTACCAACATAA---------GTGTTGGTAG 2409
|| ||.|.| || ||||||..|.|| |.|.|.|.||
2857093-28596 2438 TGTCTTTGCTGT-CA----GTACCAGAAGAAACTTCGCCTGCGGTCGAAG 2482
EMBOSS_001 2410 CACTTAAGACTTATACTTG--CCTTCTGATAGTATTC-CTTTATACAC-- 2454
|.||..|.|.| |||| || |.|||| || |||
2857093-28596 2483 CTCTGGAAAAT----CTTGATCC--------GGATTCACT-----CACCC 2515
EMBOSS_001 2455 ---------------AGTGGATT----GATTATAAATAAATAGATGTGTC 2485
|||||||| |.|| ||.|.|.|
2857093-28596 2516 CGCGTCAGGCGCTGGAGTGGATTTATCGCTT-----------GAAGAGCC 2554
EMBOSS_001 2486 T----TAACATAA 2494
| |||
2857093-28596 2555 TGGTGTAA----- 2562
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